Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0521 | PA0525 | PA0521 | PA0525 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | 0.974 |
| PA0521 | nirQ | PA0521 | PA0520 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Regulatory protein NirQ; Activator of nitrite and nitric oxide reductases. | 0.976 |
| PA0521 | nirS | PA0521 | PA0519 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Nitrite reductase precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.925 |
| PA0521 | norB | PA0521 | PA0524 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Nitric-oxide reductase subunit B; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). NorB is the catalytic subunit of the enzyme complex. Shows proton pump activity across the membrane in denitrifying bacterial cells. The mononitrogen reduction is probably coupled to electron transport phosphorylation (By similarity). | 0.973 |
| PA0521 | norC | PA0521 | PA0523 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Nitric-oxide reductase subunit C; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). | 0.985 |
| PA0521 | nosD | PA0521 | PA3393 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | NosD protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY. | 0.912 |
| PA0521 | nosL | PA0521 | PA3396 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | NosL protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.706 |
| PA0521 | nosR | PA0521 | PA3391 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Regulatory protein NosR; Transcriptional activator of the nitrous-oxide reductase gene NosZ. | 0.898 |
| PA0521 | nosY | PA0521 | PA3395 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | NosY protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY. | 0.862 |
| PA0521 | nosZ | PA0521 | PA3392 | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Nitrous-oxide reductase precursor; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; Belongs to the NosZ family. | 0.869 |
| PA0525 | PA0521 | PA0525 | PA0521 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | Probable cytochrome c oxidase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.974 |
| PA0525 | nirQ | PA0525 | PA0520 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | Regulatory protein NirQ; Activator of nitrite and nitric oxide reductases. | 0.995 |
| PA0525 | nirS | PA0525 | PA0519 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | Nitrite reductase precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.960 |
| PA0525 | norB | PA0525 | PA0524 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | Nitric-oxide reductase subunit B; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). NorB is the catalytic subunit of the enzyme complex. Shows proton pump activity across the membrane in denitrifying bacterial cells. The mononitrogen reduction is probably coupled to electron transport phosphorylation (By similarity). | 0.996 |
| PA0525 | norC | PA0525 | PA0523 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | Nitric-oxide reductase subunit C; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). | 0.995 |
| PA0525 | nosD | PA0525 | PA3393 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | NosD protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY. | 0.955 |
| PA0525 | nosL | PA0525 | PA3396 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | NosL protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.960 |
| PA0525 | nosR | PA0525 | PA3391 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | Regulatory protein NosR; Transcriptional activator of the nitrous-oxide reductase gene NosZ. | 0.959 |
| PA0525 | nosY | PA0525 | PA3395 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | NosY protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY. | 0.941 |
| PA0525 | nosZ | PA0525 | PA3392 | Probable dinitrification protein NorD; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process. | Nitrous-oxide reductase precursor; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; Belongs to the NosZ family. | 0.946 |
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